The Chemistry Department of Lehman College , City University of New York

Sequence of Web Pages used in Biochemistry CHE 446

As a resource for the class, there are web pages on Library, Net, and Database Resources , Internet, Spreadsheet, and Text Editor Resources , and Laboratory Protocols for Biochemistry & Molecular Biology .

The text for this course is Fundamentals of Biochemistry , by Donald Voet, Judith G. Voet, and Charlotte W. Pratt. The first semester of this course deals with the topics of Chapters 1-16 , the second semester with the topics of Chapters 17-27 . The course also uses associated supplements: the Biochemical Interactions CD-ROM , and the Take Note! Art Notebook. There are on-line interactive quizzes for Chapters 1-11. The web site for the text contains a list of on-line resources .

Please look at the completed term papers for this course!

Web-Based Topics for the CHE 446 Course:

• Mitochondrial Electron Transport and ATP Synthesis
• Medical Biochemistry at Indiana State University
• Mitochondrial Electron Transport Linked to Genebank
• Cell Biology from the University of Texas Medical Branch
• Complete Mitochondrial Genome Sequences
• Net Biochem at the University of Utah
• Net Biochem at the Allegheny University of the Health Sciences
• Respiration in Yeast , Humans and others, at MIPS-Munich
• Transport across Mitochondrial Membranes
• Citrate Cycle at MIPS-Munich
• Electron Transport (Chime) at Halle

 
• Chloroplasts and Photosynthesis
• Chloroplast Genome Structure at Montana
• Complete Chloroplast Gene Sequences at Montreal
• Carbon Fixation - Links to Genebank
• Porphyrin and Chlorophyll Metabolism
• Photosynthetic Collection Center at NIH and UIUCa and UIUCb and HU Jerusalem (through Leuven )
• Photosynthesis at UIUC and UC Davis
• Photosynthesis at Berkeley and Wilkes
• Photosynthesis at University of Arizona
• Chloroplasts and Photosynthesis atJohnson County Community College
• Calvin Cycle at Kimball and at MIT Arizona ,   E. Connecticut , Winnipeg , RPI , and at Hamburg
• Light-Dependent Reactions
• The Z-Scheme at Wisconsin
• The C4 (Hatch-Slack) Pathway at Wisconsin, CCBC , and Hamburg
• The CAM Pathway at Wisconsin
• Dark Respiration in Plants at Wisconsin
• Photorespiration at Marietta
• Lipid Metabolism

• Fatty Acid Biosynthesis (Mednote)
• Biosynthetic Pathway Linked to 3-D Structures at Kyoto
• Biosynthetic Pathway Linked to Protein Sequences at Kyoto
• Lecture Notes at Oregon State University
• Lecture Notes at Terre Haute Center for Medical Education
• Similarity to Beta Oxidation at Oregon State
• Structural Outline of Synthetic Steps at Oregon State
• Polyketides Chem. & Ind.
• Prostaglandins - Cyclooxygenase Inhibition at Virginia
• Aspirin and Cyclooxygenase at UPenn
• Cyclooxygenase Term Paper

 
• Beta Oxidation of Fatty Acids
• Lecture Notes at the Terre Haute Center for Medical Education
• Lecture Notes at Indiana State University ( Overview)
• Lecture Notes at the Michigan State University College of Veterinary Medicine
• Lecture Notes at Oregon State University
• Lecture Notes at Humboldt State University
• Transport into the Mitochondrion at Washington U.
• Schematic Overview at Oregon State
• Structural Pathway at Fordham
• Knoop's Experiments at Oregon State
• Disorders of Fatty Acid Oxidation at Johns Hopkins

 
• Membrane Components
• Sphingophospholipid Biosynthesis at MIPS-Munich
• Glycerolipid Metabolism at SRS
• Phospholipid Degradation at SRS
• Glycolipids at UCSD
• Phospholipids (Chime) at College of St. Scholastica (CSS)
• Lipid Monolayer (Chime) atCSS
• Lipid Bilayer (Chime) at CSS
• How to Make a Phospholipid (Chime) at CSS
• Gramicidin in a Membrane (Chime) at CSS

 
• Cholesterol, bile acids, and steroid hormones at UCSD
• Practice Exam at Texas A&M

• Amino Acid Biosynthesis
• Lecture at Colorado State
• Lecture at WSU
• Lectures at KUMC
• Transamination Reactions at UC San Diego
• Transamination at at MSU-Winona
• Urea Cycle at MSU-Winona
• Amino Acids and the TCA Cycle at MSU-Winona
• Thyroid hormones at Naples
• Catecholamines at Naples
• Histamine at Naples
• Melatonin at Naples
• Sulfur-Containing Amino Acid Biosynthesis at MIPS
• The Urea Cycle at Pathway - in SRS6
• Cysteine Metabolism at SRS
• Methionine Metabolism at SRS
• Glycine, Serine, and Threonine Metabolism at SRS
• Alanine and Aspartate Metabolism at SRS
• Glutamate Metabolism at SRS
• Valine, Leucine, and Isoleucine Biosynthesis at SRS
• Arginine and Proline Metabolism at SRS
• Lysine Degradation and Biosynthesis at SRS
• Phenylalanine Metabolism at SRS
• Tyrosine Metabolism at SRS
• Histidine Metabolism at SRS
• Phenylalanine Metabolism at SRS
• Aromatic Amino Acid Biosynthesis at SRS
• Modification Reactions of Amino Acids at Naples
• At Lehman
• Nitrogen Sources
• Chorismate 1 and 2 , Tyrosine , Tryptophan , Phenylalanine
• Lysine 1 and 2
• Homoserine and Homoserine-Threonine
• Folate 1 and 2 and Biopterin
• Cystathionine and Cysteine
• Arginine
• Mammalian Fuel Metabolism: Integration and Regulation
• Amino Acids at Maryland
• Regulation of Glycogen Metabolism at Indiana State
• Regulation of Glycogen Metabolism at Oklahoma State
• Mechanisms of Signal Transduction at Indiana State
• Signal Transduction at KUMC
• Hormones at UMBC
• Endocrinology at RPI
• Endocrinology at Wisconsin with Figures
• Biochemical Nutrition at KUMC
• Signal Transduction Knowledge Environment
• Signal Transduction at Kansas
• The yeast pheromone signal transduction pathway at NRC-Canada
• Nobel Lecture: Signal Transduction in Cells
• Nitric Oxide at UCSD
• G-Protein Structure (Chime) at Virginia

• Nucleotide Metabolism
• Pyrimidine and Purine Metabolism at UCSD
• Pyrimidine metabolic pathway at MIPS
• Purine Metabolic Pathway at Genome-Japan
• Purine Biosynthesis at U of N. Mexico
• Purine Metabolism at Kansas
• Pyrimidine Metabolism at Kansas
• Pyrimidine Biosynthesis at U of N. Mexico
• Coregulation of purine biosynthesis & glutamine, glycine and 10-f-THF biosynthesis at MIPS
• Genes for Purine Metabolism at UC London
• Lesch-Nyhan Syndrome - Purine Salvage Pathway at Utah
• Salvage Pathway for Pyrimidines at Indiana State
• Other Genetic Defects of Purine Metabolism at Indiana State
• Genetic Defects of Pyrimidine Metabolism
• Purine Catabolism: Uric Acid at Utah
• Pyrimidine Catabolism at Utah

• Nucleic Acid Structure
• DNA and RNA structure (Chime) at CMU
• Nucleosome Structure at CMU
• DNA Methylase at CMU
• A-Form RNA and B-Form DNA Structures at CMU
• Computational Analysis of Complete DNA Sequences at MIPS
• DNA Structure and Chemistry at Kansas
• Genomic DNA, Genes, Chromatin at Kansas
• DNA Cloning and Library Construction at Kansas

• DNA Replication, Repair, and Recombination
• DNA Replication, Mutation, Repair at Kansas
• Replication complexes during the cell cycle at MIPS
• Mre11 complex in repair & recombination in yeast at MIPS
• Spindle pole body components at MIPS
• EcoR1-DNA Structure at CMU
• Gene Structure at Duke

• Transcription and RNA Processing
• RNA Structure and Transcription at Kansas
• Eukaryotic Transcriptional Regulation at Kansas
• RNA Processing at Kansas
• cAMP Receptor Protein (CRP, a.k.a. CAP) at CMU
• Pre-rRNA processing pathway in S.cerevisiae at MIPS
• The yeast GAL4 transcriptional activator at CMU
• RNA Polymerase II Transcription Initiation Machinery at MIPS
• TAFII-containing complexes in yeast and humans. at MIPS
• Splicing of mRNA mediated by the U1A-RNA Complex at CMU
• Packaging, splicing, and transport of mRNA by human hnRNP A1 at CMU

• Translation
• Protein Synthesis and the Genetic Code at Kansas
• Protein Synthesis and Protein Processing at Kansas
• Yeast t-RNA Structure (Chime) at CMU
• EF-Tu: a translational elongation factor that binds to charged tRNAs at CMU
• The Ribosome at Wadsworth
• Protein Homology Domain Cluster Browser at MIPS
• The ubiquitin-mediated proteolytic pathway at MIPS

• Regulation of Gene Expression
• The Yeast pheromone signal transduction pathway at MIPS
• MAPK signalling pathways of S. cerevisiae at MIPS
• The yeast mating and filamentation signalling pathway at MIPS
• Regulation of FKS2 expression in yeast at MIPS
• GLO1 gene induction under highly osmotic conditions at MIPS
• Zinc-Finger-DNA Interactions at CMU
• Nuclear Hormone Receptors at Kansas

 
• Antibody Gene Expression
• The Immune System at Hong Kong
• Mike's Antibody Links
• Cellsalive How Lymphocytes Produce Antibody
• Antibody Classes also from Virtual Explorer
• Monoclonal Antibodies and HAT Medium
• Cells of the immune system
• Antibody Recognition
• Generation of Antibody Diversity
• Antibodies at USC
• Antibody Response at FSU
• Amino Acid Sequence Variability at ILSTU
• Generation of Diversity at KCOM
• Complement at KCOM

This page  is being prepared by Manfred Philipp; it was last updated on May 7, 2000.